SuperPete said:
Ok, so every time I get new tune from Matt, I need to return vehicle to stock, then update?
I personally always recommend returning to stock before updating. If you brick the handheld, you'll need to send it to SCT for unlock, and then you'll lose connection with your pcm and it'll require having the PCM reflashed by Ford (2 hours of labor) to return to factory.
It's an extra step but saves a lot of headache, especially with how buggy these things are since the EPA got involved.